Software para neurociencia computacional

Arbor

sudo dnf install arbor-{,mpich,openmpi}

The Arbor multi-compartment neural network simulation library.

Auryn

sudo dnf install auryn-{mpich,openmpi}

A simulator for spiking neural networks with plastic synapses. Only built with MPI support.

bionetgen

sudo dnf install bionetgen

Software for rule-based modeling of biochemical systems.

Brian (v1)

Please see COPR.

A clock-driven simulator for spiking neural networks.

Brian2

sudo dnf install python3-brian2

A clock-driven simulator for spiking neural networks.

CalC: Calcium calculator

sudo dnf install calcium-calculator

A modeling tool for simulating intracellular calcium diffusion and buffering.

COPASI

sudo dnf install COPASI

A software application for simulation and analysis of biochemical networks and their dynamics.

Genesis

sudo dnf install genesis-simulator

The GEneral NEural Simulation System.

jLEMS

sudo dnf install jlems

Intérprete Java para la Especificación de Modelo de Entropía Baja (LEMS) del lenguaje.

mod2c

sudo dnf install mod2c

NMODL to C adapted for CoreNEURON simulator.

Moose

sudo dnf install moose

Multiscale Neuroscience and Systems Biology Simulator.

MUSIC

sudo dnf install MUSIC

MUSIC, el Coordenador MUltiSimulation.

NEAT

sudo dnf install python3-neatdend

A python library for the study, simulation and simplification of morphological neuron models.

NEST

sudo dnf install python3-nest nest

The neural simulation tool. Built with MPI support. Please see this page for details on installation.

NetPyNE

sudo dnf install python3-netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

NEURON

sudo dnf install python3-neuron neuron neuron-devel

A flexible and powerful simulator of neurons and networks. Currently not built with MPI support. /usr/bin/oc has been renamed to /usr/bin/hoc (rhbz 1696118).

neurord

sudo dnf install neurord

Stochastic reaction-diffusion simulator.

neurotune

sudo dnf install python3-neurotune

A package for optimizing electical models of excitable cells.

NiaPy

sudo dnf install python3-niapy

Python microframework for building nature-inspired algorithms.

PyLEMS

sudo dnf install python3-PyLEMS

Python interpreter for the Low Entropy Model Specification (LEMS) language.

PyNN

sudo dnf install python3-pynn

Simulator-independent specification of neuronal network models.

libsonata

sudo dnf install python3-libsonata libsonata

Python and C++ interface to the SONATA format.

LFPy

sudo dnf install python3-lfpy

Module for extra cellular potentials of multicompartment neuron models on NEURON.

LFPykit

sudo dnf install python3-lfpykit

Freestanding implementations of electrostatic forward models incorporated in LFPy.

RatInABox

sudo dnf install python3-ratinabox

A package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

SciUnit

sudo dnf install python3-sciunit

Un Framework de Test-Driven para Formally Validating Scientific Models Against Data.

STEPS

sudo dnf install python3-steps{,-mpich,-openmpi}

Motor STochastic para Simulación Pathway.

smoldyn

sudo dnf install smoldyn

Un similador estocástico espacial basado en pertículas.