Software for neuro-imaging

The following tools are among the software currently available in NeuroFedora:

Software Usage Notes

MNE

pip install mne

MNE-BIDS

pip install mne-bids

nipype

pip install nipype

pybids

pip install pybids

pybv

pip install pybv

| Alizams | sudo dnf install alizams | A DICOM viewer.

| DICOMAnonymizer | sudo dnf install dicomanonymizer | A multi-threaded anonymizer for DICOM files implementing most of DICOM PS 3.15 AnnexE

| dipy | sudo dnf install python3-dipy | Diffusion MRI utilities in Python.

| ephyviewer | sudo dnf install python3-ephyviewer | A Python library based on pyqtgraph for building custom viewers for electrophysiological signals, video, events, epochs, spike trains, data tables, and time-frequency representations of signals.

| fsleyes | sudo dnf install python3-fsleyes | FSLeyes, the FSL image viewer.

| jnifti | sudo dnf install octave-jnifti | A fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter

| nilearn | sudo dnf install python3-nilearn | Python module for fast and easy statistical learning on NeuroImaging data.

| nistats | sudo dnf install python3-nistats | Modeling and Statistical analysis of fMRI data in Python.

| octave-dicom | sudo dnf install octave-dicom | dicom: file io for medical images and other data.

| pybids | sudo dnf install python3-pybids | Interface with datasets conforming to BIDS.

| petlink | sudo dnf install python3-petlink | Decode and encode Petlink data streams (32 and 64 bit).

| pynetdicom | sudo dnf install python3-pynetdicom | A Python implementation of the DICOM networking protocol.

Software that is in the queue for inclusion is listed here.

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