Software for neuro-imaging

Upstream packages

The following tools are among the software currently tested in NeuroFedora and can be installed directly from upstream forges (e.g. PyPi):

Python packages

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Software Summary pip (PyPi) Notes

Software	Summary	pip (PyPi)	Notes
mne	MNE-Python project for MEG and EEG data analysis.	`mne`
mne-bids	MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating their analysis with MNE-Python.	`mne-bids`
nilearn	Statistical learning for neuroimaging in Python.	`nilearn`
nipype	Neuroimaging in Python: Pipelines and Interfaces.	`nipype`
pybids	bids: interface with datasets conforming to BIDS.	`pybids`
wxnatpy	wxPython XNAT repository browser.	`wxnatpy`	Does not build from PyPi

mne

MNE-Python project for MEG and EEG data analysis.

mne

mne-bids

MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating their analysis with MNE-Python.

mne-bids

nilearn

Statistical learning for neuroimaging in Python.

nilearn

nipype

Neuroimaging in Python: Pipelines and Interfaces.

nipype

pybids

bids: interface with datasets conforming to BIDS.

pybids

wxnatpy

wxPython XNAT repository browser.

wxnatpy

Does not build from PyPi

Showing 1 to 6 of 6 entries

System packages

The following are included in the repositories:

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Software Install with Notes

Software	Install with	Notes
Alizams	`sudo dnf install alizams`	A DICOM viewer.
DICOMAnonymizer	`sudo dnf install dicomanonymizer`	A multi-threaded anonymizer for DICOM files implementing most of DICOM PS 3.15 AnnexE
dipy	`sudo dnf install python3-dipy`	Diffusion MRI utilities in Python.
ephyviewer	`sudo dnf install python3-ephyviewer`	A Python library based on pyqtgraph for building custom viewers for electrophysiological signals, video, events, epochs, spike trains, data tables, and time-frequency representations of signals.
fsleyes	`sudo dnf install python3-fsleyes`	FSLeyes, the FSL image viewer.
giftiio	`sudo dnf install python3-giftiio`	Python library for working with GIFTI.
jnifti	`sudo dnf install octave-jnifti`	A fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter
nilearn	`sudo dnf install python3-nilearn`	Python module for fast and easy statistical learning on NeuroImaging data.
nistats	`sudo dnf install python3-nistats`	Modeling and Statistical analysis of fMRI data in Python.
octave-dicom	`sudo dnf install octave-dicom`	dicom: file io for medical images and other data.
petlink	`sudo dnf install python3-petlink`	Decode and encode Petlink data streams (32 and 64 bit).
pybids	`sudo dnf install python3-pybids`	Interface with datasets conforming to BIDS.
pynetdicom	`sudo dnf install python3-pynetdicom`	A Python implementation of the DICOM networking protocol.

Alizams

sudo dnf install alizams

A DICOM viewer.

DICOMAnonymizer

sudo dnf install dicomanonymizer

A multi-threaded anonymizer for DICOM files implementing most of DICOM PS 3.15 AnnexE

dipy

sudo dnf install python3-dipy

Diffusion MRI utilities in Python.

ephyviewer

sudo dnf install python3-ephyviewer

A Python library based on pyqtgraph for building custom viewers for electrophysiological signals, video, events, epochs, spike trains, data tables, and time-frequency representations of signals.

fsleyes

sudo dnf install python3-fsleyes

FSLeyes, the FSL image viewer.

giftiio

sudo dnf install python3-giftiio

Python library for working with GIFTI.

jnifti

sudo dnf install octave-jnifti

A fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter

nilearn

sudo dnf install python3-nilearn

Python module for fast and easy statistical learning on NeuroImaging data.